Ok first off I give starl1te full credit for letting me know this. I don't have a lot of time to look into why my bot is not working or coding changes anymore. If you are having the Issues with the questing behaviors. It can be fixed if you are using Kicks Profile or Pandaren Dailies by UPDATING the profiles AFTER doing a fresh install. Do this in a new folder SO YOU MAKE SURE that only the fresh files are being used by honorbuddy. And the questing profiles you are loading are updated or dont have a quest behavior problem. USE Kicks SVN to update his profile pack: https://kicks-scripts.googlecode.com/svn/trunk/ I am unsure of all the profile packs that need to be updated for the quest behavior issue. But if you would like to post them here I'm sure people would be appreciative to know which profiles have been updated and need to be re-downloaded.
You can also copy the quest behaviour folder in the zip over to the HB folder for it to work. I know some people are saying to a fresh install, but some people are opposed to it. So copying the folder from the zip to your updated HB folder works as well.
if your having issues with questing do a FRESH install, and updating the profiles your using wont hurt ether.
I did a fresh install and updated profiles via SVN and so far it seems to be working. Kind of a nuisance enabling and configuring all the plugins again but a small price to pay imo.